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Try more debugging by printing out ALL the Strings that are read and processed by the code to see where the data goes missing. Read the lines into a String and print the String before adding it to...

Are you saying this line
0,-66.00,
should contain something else?

What happened to the value that you want printed?

Can the input file be minimized to the smallest possible contents?

If you have any questions about your code, post it here with the questions.

The logic seems simple enough. What problems are you having writing the code to do it?
One technique would be to use boolean variables to remember the state of the search.