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You keep declaring a new Socket.

I'd suggest using the Scanner and StringBuilder classes.

Never-mind I got it to work:

I had to add:
System.out.printf("A: == (%1$1.0f%%)\r\n", ((float) countBase(
getSequence(fastaFile), 'A') / totalCount) * 100);

public static void main(String[] args) {
getFile();

if (fastaFile != null) {
totalCount = countBase(getSequence(fastaFile), 'A')
+ countBase(getSequence(fastaFile), 'G')
+...

Thanks for the replies! I will check into those.

To provide more insight on the thread, the numbers aren't in any order. What the function merge is supposed to do is:

combine both arrays into...

This is what I have:

package challengespackage;

public class ArrayMerge {

public static void main(String[] args) {
System.out.print(merge(new int[] { 9, 3, 0 }, new int[] { 4, 7, 8 }));...