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If you're going to write a program to use FTP to upload the files, you should first understand the FTP protocol.
The RFC for FTP gives all that there is, but its a bit detailed.
You should get an...

It's not too hard to write your own FTP program in java. Find the RFC(request for comments - an old term) that defines the FTP protocol and code to its specifications.
Use Google to find the RFC...

Can you read the FAQ or doc for the website to see how you can send it files?
Some sites have a FTP interface that you can use to send files to a server.

Think what the mess would be if it were...

Where does the code execute that is supposed to write to the file on the server? I would think that to write a file on the server, there must be code executed on the server to do the writing.
Your...